Draft: Scientific wf domain specific language

A simple workflow language with FireWorks as backend.

• Python functions
  • function names, kwargs
  • dataflow: input and output data
• Shell scripts
  • script as a string
  • managing stdin, stdout, stderr
  • manage files (stage-in, stage-out)

solving issue #17 (closed)

assigned to @jk7683

By sruthy.sreenivasan on 2022-03-10T13:21:12 (imported from GitLab)

marked this merge request as draft

By sruthy.sreenivasan on 2022-03-10T13:21:26 (imported from GitLab)

added 1 commit

• 046f07b8 - modified grammar to solve issue managed files (_files_in, _files_out)

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By sruthy.sreenivasan on 2022-04-04T11:05:38 (imported from GitLab)

added 1 commit

• 7190351b - modified interpreter to solve issue managed files (_files_in, _files_out)

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By sruthy.sreenivasan on 2022-04-04T11:06:36 (imported from GitLab)

added 1 commit

• acf2c0d6 - modified program to test managed files (_files_in, _files_out)

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By sruthy.sreenivasan on 2022-04-04T11:07:48 (imported from GitLab)

added 12 commits

• acf2c0d6...d00435d8 - 11 commits from branch master
• db066b55 - Merge branch 'master' of https://git.scc.kit.edu/jk7683/vre-language into scientific_wf_dsl

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By sruthy.sreenivasan on 2022-04-04T11:10:57 (imported from GitLab)

added 1 commit

• 1a528d16 - removed lines stdin_file and stdout_file (to be solved in next commit)

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By sruthy.sreenivasan on 2022-04-04T11:19:36 (imported from GitLab)

added 3 commits

• ab4bb2ee - modified grammar to solve issue managing stdin, stdout
• 056c56f8 - modified interpreter to solve issue managing stdin, stdout
• 99c14445 - modified program to test managing stdin, stdout

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By sruthy.sreenivasan on 2022-04-04T16:48:17 (imported from GitLab)

added 3 commits

• 639d4511 - modified grammar to solve issue managing stderr
• b162750e - modified interpreter to solve issue managing stderr
• fce56855 - modified program to test stderr

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By sruthy.sreenivasan on 2022-04-04T18:28:44 (imported from GitLab)

Ok I got this. Sure, I will figure out a solution for this.

By sruthy.sreenivasan on 2022-04-06T13:02:17 (imported from GitLab)

added 1 commit

• a9c4c055 - removed unwanted print statement, flake8, use of LAUNCHPAD_LOC

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By sruthy.sreenivasan on 2022-04-08T19:22:18 (imported from GitLab)

resolved all threads

By sruthy.sreenivasan on 2022-04-08T19:22:33 (imported from GitLab)

added 1 commit

• 6b215c52 - grammar for query

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By sruthy.sreenivasan on 2022-05-22T22:50:29 (imported from GitLab)

added 1 commit

• cf010899 - modified interpreter for query part

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By sruthy.sreenivasan on 2022-05-22T22:51:26 (imported from GitLab)

added 1 commit

• 284fcd53 - modified language for query part

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By sruthy.sreenivasan on 2022-05-22T22:54:48 (imported from GitLab)

After some reflections I decided to close this MR. The branch should be kept, probably it should later go to another project in this group.

By ivan.kondov on 2022-08-30T19:24:38 (imported from GitLab)

closed