added runskript benchmark

tools/solving/cuboidTests.py

+import sys
+sys.path.append('../../')
+import os
+import shutil
+import mpp.python.mppy as mppy
+
+lList = [0,1,2,3]
+tList = [0,1,2,3]
+#start_dt=0.0001
+start_dt=0.0004
+
+path='../../../data/Cuboid/'
+pathToMakeFolders=path #'../'+path
+
+def moveActivationtime(l,j, expPath,moveVtu=False):
+    shutil.move('../../build/data/AT_l'+str(l)+'j'+str(j)+'.txt', pathToMakeFolders+expPath+'AT_l'+str(l)+'j'+str(j)+'.txt')
+    if moveVtu:
+        shutil.move('../../build/data/vtu/ActivationTime.vtu', pathToMakeFolders+expPath+'AT_l'+str(l)+'j'+str(j)+'.vtu')
+    
+        
+
+def startExperiment(procs,startconf,pE,added=None,moveVTU=False):
+    checkIfFolderExists(pE)
+    mpp = mppy.Mpp(project_name='CardMech',executable='Elphy-M++',kernels=4,mute=False)
+    
+    for l in lList:
+        for j in tList:
+            file = path+pE+'log_l'+str(l)+'j'+str(j)+'m1'
+            kwargs={"ElphyProblem":"ElphyBenchmarkNiederer","ElphyLevel": l,"DeltaTime":start_dt*2**(-j),"logfile":file,"EndTime":0.3,"ElphyVTK":0,"ElphyTimeLevel":j}
+            if added!=None:
+                kwargs.update(added)
+            mpp.run(procs, config=startconf, kwargs=kwargs) #replace 64 by hosts if necessary
+            moveActivationtime(l,j,pE,moveVTU)
+
+def checkIfFolderExists(path):
+    folderPath =pathToMakeFolders+path
+    if not os.path.exists(folderPath):
+        os.makedirs(folderPath)   
+    
+if __name__=="__main__":
+    procs=64
+    startconf="electrophysiology/testCellEvaluation"
+    moveVTU=True
+    
+    #test original
+    pathExperiment="SI0004/"
+    startExperiment(procs,startconf,pathExperiment,{'EndTime':0.16,"ParallelPlotting":False,"Compression":"ascii"},moveVTU)
+    
+    pathExperiment="SIOC0004/"
+    startExperiment(procs,startconf,pathExperiment,{"ElphyModel":"SemiImplicitOnCells",'EndTime':0.16,"ParallelPlotting":False,"Compression":"ascii"},moveVTU)
+