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Commit 8d993bc1 authored by Ivan Kondov's avatar Ivan Kondov
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adapted wf input and qadapter to fh2, tm calculation in two steps

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_fw_name: CommonAdapter
_fw_q_type: SLURM
rocket_launch: rlaunch -w /home/kit/scc/jk7683/grk2450-fireworks-tutorial/advanced/config/fworker_turbomole.yaml -l /home/kit/scc/jk7683/grk2450-fireworks-tutorial/advanced/config/launchpad.yaml rapidfire --nlaunches 1
rocket_launch: rlaunch -w /home/fh2-project-devel/jk7683/grk2450-fireworks-tutorial/demos/6_advanced/config/fworker_fh2_turbomole.yaml -l /home/fh2-project-devel/jk7683/.fireworks/launchpad_mongonm1_test.yaml rapidfire --nlaunches 1
nodes: 1
ntasks: 20
walltime: '00:30:00'
queue: normal
ntasks: 2
walltime: '00:10:00'
queue: develop
account: null
job_name: null
pre_rocket: export PARA_ARCH=MPI; module purge; module load anaconda3 chem/turbomole; export PYTHONPATH=/home/kit/scc/jk7683/grk2450-fireworks-tutorial/lib:$PYTHONPATH
pre_rocket: module use $PROJECT/modulefiles; module purge; export PARA_ARCH=MPI; module load anaconda3 chem/turbomole; export PYTHONPATH=/home/fh2-project-devel/jk7683/grk2450-fireworks-tutorial/lib:$PYTHONPATH
post_rocket: null
......@@ -3,7 +3,7 @@ fws:
name: Relax H2O structure
spec:
_category: turbomole
_fworker: uc1
_fworker: fh2
_dupefinder:
_fw_name: DupeFinderExact
_tasks:
......@@ -60,7 +60,7 @@ fws:
name: Normal mode analysis of H2O (numerical derivatives)
spec:
_category: turbomole
_fworker: uc1
_fworker: fh2
_dupefinder:
_fw_name: DupeFinderExact
_tasks:
......@@ -106,7 +106,7 @@ fws:
name: Normal mode analysis of H2O (analytical derivatives)
spec:
_category: turbomole
_fworker: uc1
_fworker: fh2
_dupefinder:
_fw_name: DupeFinderExact
_tasks:
......
fws:
- fw_id: -3
name: Normal mode analysis of H2O (analytical derivatives)
spec:
_category: turbomole
_fworker: fh2
_dupefinder:
_fw_name: DupeFinderExact
_tasks:
- _fw_name: PyTask
func: compchem.calculate_vibrations
inputs:
- relaxed structure
- constraints
- calculator
outputs:
- vibrational energies
- zero-point energy
- transition state
- energy minimum
calculator:
name: turbomole
parameters:
task: frequencies
multiplicity: 1
total charge: 0
basis set name: def-SV(P)
use dft: true
use resolution of identity: true
density functional: pbe
density convergence: 1e-8
constraints: []
links:
'-3': []
metadata: {}
fws:
- fw_id: 1
name: Relax H2O structure
spec:
_category: turbomole
_fworker: fh2
_dupefinder:
_fw_name: DupeFinderExact
_tasks:
- _fw_name: PyTask
func: compchem.structure_relaxation
inputs:
- structure
- constraints
- calculator
outputs:
- relaxed structure
- energy
- forces
- dipole
calculator:
name: turbomole
parameters:
task: optimize
multiplicity: 1
total charge: 0
use redundant internals: true
basis set name: def-SV(P)
use dft: true
use resolution of identity: true
density functional: pbe
force convergence: 0.005
geometry optimization iterations: 100
structure:
atoms:
cell:
- - 12.0
- 0.0
- 0.0
- - 0.0
- 12.0
- 0.0
- - 0.0
- 0.0
- 12.0
numbers: [8, 1, 1]
pbc: [true, true, true]
positions:
- - 6.0
- 6.0
- 6.0
- - 6.96504783
- 5.87761163
- 6.0
- - 5.87761163
- 6.96504783
- 6.0
constraints: []
links:
'1': []
metadata:
density functional: PBE
calculator: turbomole
name: H2O normal modes - extend as you go
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