[0KRunning with gitlab-runner 17.6.0 (374d34fd)[0;m
[0K on gitlab-runner-kit-mpp-5989fd554d-rlpb6 83j_cbA7v, system ID: r_oCe51QS3lRbj[0;m
[0K feature flags: FF_USE_FASTZIP:true[0;m
[0K[36;1mResolving secrets[0;m[0;m
section_start:1743254490:prepare_executor
[0K[0K[36;1mPreparing the "kubernetes" executor[0;m[0;m
[0KUsing Kubernetes namespace: default[0;m
[0KUsing Kubernetes executor with image harbor.cluster.math.kit.edu/mpp_release/mpp_dev_ubuntu:24.04 ...[0;m
[0KUsing attach strategy to execute scripts...[0;m
section_end:1743254490:prepare_executor
[0Ksection_start:1743254490:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
[0KUsing FF_USE_POD_ACTIVE_DEADLINE_SECONDS, the Pod activeDeadlineSeconds will be set to the job timeout: 1h0m0s...[0;m
Waiting for pod default/runner-83jcba7v-project-159678-concurrent-0-xchxdq6j to be running, status is Pending
Waiting for pod default/runner-83jcba7v-project-159678-concurrent-0-xchxdq6j to be running, status is Pending
ContainersNotInitialized: "containers with incomplete status: [init-permissions]"
ContainersNotReady: "containers with unready status: [build helper]"
ContainersNotReady: "containers with unready status: [build helper]"
Waiting for pod default/runner-83jcba7v-project-159678-concurrent-0-xchxdq6j to be running, status is Pending
ContainersNotReady: "containers with unready status: [build helper]"
ContainersNotReady: "containers with unready status: [build helper]"
Running on runner-83jcba7v-project-159678-concurrent-0-xchxdq6j via gitlab-runner-kit-mpp-5989fd554d-rlpb6...
section_end:1743254500:prepare_script
[0Ksection_start:1743254500:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 50...[0;m
Initialized empty Git repository in /builds/kit/mpp/cardmech/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out 8f9a221d as detached HEAD (ref is feature)...[0;m
[32;1mUpdating/initializing submodules recursively with git depth set to 50...[0;m
Submodule 'mpp' (https://gitlab-ci-token:[MASKED]@gitlab.kit.edu/kit/mpp/mpp.git) registered for path 'mpp'
Synchronizing submodule url for 'mpp'
Cloning into '/builds/kit/mpp/cardmech/mpp'...
Submodule path 'mpp': checked out 'e448af94f8abb4d860b9ce064dd363c663353690'
Submodule 'TASMANIAN' (https://github.com/ORNL/TASMANIAN.git) registered for path 'mpp/submodules/TASMANIAN'
Submodule 'benchmark' (https://github.com/google/benchmark.git) registered for path 'mpp/submodules/benchmark'
Submodule 'googletest' (https://github.com/google/googletest.git) registered for path 'mpp/submodules/googletest'
Submodule 'json' (https://github.com/nlohmann/json.git) registered for path 'mpp/submodules/json'
Submodule 'pugixml' (https://github.com/zeux/pugixml.git) registered for path 'mpp/submodules/pugixml'
Submodule 'sprng5' (https://gitlab.kit.edu/kit/mpp/sprng5.git) registered for path 'mpp/submodules/sprng5'
Submodule 'superlu' (https://github.com/xiaoyeli/superlu.git) registered for path 'mpp/submodules/superlu'
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/TASMANIAN'...
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/benchmark'...
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/googletest'...
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/json'...
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/pugixml'...
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/sprng5'...
Cloning into '/builds/kit/mpp/cardmech/mpp/submodules/superlu'...
Submodule path 'mpp/submodules/TASMANIAN': checked out '3fdd52561a8eb6354bdc388d73c6205a3c9768d4'
From https://github.com/google/benchmark
* branch ca8d0f7b613ac915cd6b161ab01b7be449d1e1cd -> FETCH_HEAD
Submodule path 'mpp/submodules/benchmark': checked out 'ca8d0f7b613ac915cd6b161ab01b7be449d1e1cd'
From https://github.com/google/googletest
* branch 2dd1c131950043a8ad5ab0d2dda0e0970596586a -> FETCH_HEAD
Submodule path 'mpp/submodules/googletest': checked out '2dd1c131950043a8ad5ab0d2dda0e0970596586a'
From https://github.com/nlohmann/json
* branch edffad036d5a93ab5a10f72a7d835eeb0d2948f9 -> FETCH_HEAD
Submodule path 'mpp/submodules/json': checked out 'edffad036d5a93ab5a10f72a7d835eeb0d2948f9'
Submodule path 'mpp/submodules/pugixml': checked out 'ef856bf975f4b1909af1b40ed3d7e28af9263d95'
Submodule path 'mpp/submodules/sprng5': checked out 'dbb8b0102d72f8b7b9ed80a055f0112ce6f5b827'
From https://github.com/xiaoyeli/superlu
* branch 5b7be754ca80f35a14cb95d318f21ba3bba112f0 -> FETCH_HEAD
Submodule path 'mpp/submodules/superlu': checked out '5b7be754ca80f35a14cb95d318f21ba3bba112f0'
[32;1mUpdated submodules[0;m
Synchronizing submodule url for 'mpp'
Synchronizing submodule url for 'mpp/submodules/TASMANIAN'
Synchronizing submodule url for 'mpp/submodules/benchmark'
Synchronizing submodule url for 'mpp/submodules/googletest'
Synchronizing submodule url for 'mpp/submodules/json'
Synchronizing submodule url for 'mpp/submodules/pugixml'
Synchronizing submodule url for 'mpp/submodules/sprng5'
Synchronizing submodule url for 'mpp/submodules/superlu'
Entering 'mpp'
Entering 'mpp/submodules/TASMANIAN'
Entering 'mpp/submodules/benchmark'
Entering 'mpp/submodules/googletest'
Entering 'mpp/submodules/json'
Entering 'mpp/submodules/pugixml'
Entering 'mpp/submodules/sprng5'
Entering 'mpp/submodules/superlu'
Entering 'mpp'
Entering 'mpp/submodules/TASMANIAN'
Entering 'mpp/submodules/benchmark'
Entering 'mpp/submodules/googletest'
Entering 'mpp/submodules/json'
Entering 'mpp/submodules/pugixml'
Entering 'mpp/submodules/sprng5'
Entering 'mpp/submodules/superlu'
section_end:1743254611:get_sources
[0Ksection_start:1743254611:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mNot downloading cache build-cardmech-ubuntu24.04:feature-3-protected due to policy[0;m
[32;1mChecking cache for ccache-build-cardmech-ubuntu24.04:feature-3-non_protected...[0;m
Downloading cache from http://rook-ceph-rgw-runner-cache.rook-ceph.svc/runner-cache-b8e508f4-8327-4ffe-9d9b-c3a2e75c9ab1/gitlab-runner-mpp/runner/83j_cbA7v/project/159678/ccache-build-cardmech-ubuntu24.04%3Afeature-3-non_protected[0;m ETag[0;m="27ff0384cfef27c5270c244f1b832623"
Downloading cache 12.58 KB/1.69 GB (132.7 MB/s)
Downloading cache 217.84 MB/1.69 GB (43.6 MB/s)
Downloading cache 448.79 MB/1.69 GB (44.9 MB/s)
Downloading cache 645.92 MB/1.69 GB (43.1 MB/s)
Downloading cache 876.61 MB/1.69 GB (43.8 MB/s)
Downloading cache 1.10 GB/1.69 GB (44.1 MB/s)
Downloading cache 1.24 GB/1.69 GB (41.4 MB/s)
Downloading cache 1.53 GB/1.69 GB (43.7 MB/s)
Downloading cache 1.69 GB/1.69 GB (44.6 MB/s)
[32;1mSuccessfully extracted cache[0;m
section_end:1743254688:restore_cache
[0Ksection_start:1743254688:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[32;1m$ CACHE_NAME="${CI_JOB_NAME}-${OS}${OS_VERSION}:${CI_COMMIT_REF_SLUG}"[0;m
[32;1m$ CACHE_CCACHE_NAME="${CI_JOB_NAME}-${OS}${OS_VERSION}:${CI_COMMIT_REF_SLUG}"[0;m
[32;1m$ echo "CACHE_NAME=${CACHE_NAME}" >> build.env[0;m
[32;1m$ echo "CACHE_CCACHE_NAME=${CACHE_CCACHE_NAME}" >> build.env[0;m
[32;1m$ cat build.env[0;m
CACHE_NAME=build-cardmech-ubuntu24.04:feature
CACHE_CCACHE_NAME=build-cardmech-ubuntu24.04:feature
[32;1m$ ccache -z[0;m
Statistics zeroed
[32;1m$ git config --global --add safe.directory $(pwd)[0;m
[32;1m$ if [ "${UPSTREAM_COMMIT}" = "" ]; then # collapsed multi-line command[0;m
UPSTREAM_COMMIT: 5706b036e059f7fd650aee592fc8f5d12a578514
+refs/heads/feature:refs/remotes/origin/feature
+refs/heads/*:refs/remotes/origin/*
From https://gitlab.kit.edu/kit/mpp/mpp
* [new branch] 727-qmc-generator -> origin/727-qmc-generator
* [new branch] 766-hdf5-support -> origin/766-hdf5-support
* [new branch] 766-hdf5-support-Hdf5Basic -> origin/766-hdf5-support-Hdf5Basic
* [new branch] 766-hdf5-support-Parallel -> origin/766-hdf5-support-Parallel
* [new branch] 766-hdf5-support-ParallelTest -> origin/766-hdf5-support-ParallelTest
* [new branch] 782-fix-multigrid-for-nonlinear-problems -> origin/782-fix-multigrid-for-nonlinear-problems
* [new branch] 784-include-estimators-in-sgd -> origin/784-include-estimators-in-sgd
* [new branch] 787-random-material-sampling -> origin/787-random-material-sampling
* [new branch] 791-create-non-linear-spacetime-acoustic-assemble -> origin/791-create-non-linear-spacetime-acoustic-assemble
* [new branch] 792-ginkgo-interface-2 -> origin/792-ginkgo-interface-2
* [new branch] NumL-Distribution-Adaptivity -> origin/NumL-Distribution-Adaptivity
* [new branch] Update-VtuConverter -> origin/Update-VtuConverter
* [new branch] benchmarks -> origin/benchmarks
* [new branch] better-elliptic-tests -> origin/better-elliptic-tests
* [new branch] feat/matrixFree -> origin/feat/matrixFree
* [new branch] feature-changedprecision -> origin/feature-changedprecision
* [new branch] master -> origin/master
* [new branch] merge-transport-solid -> origin/merge-transport-solid
* [new branch] mppytorch -> origin/mppytorch
* [new branch] ref/matrixFreeMemoryChanges -> origin/ref/matrixFreeMemoryChanges
* [new branch] transport-solid -> origin/transport-solid
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.googletest.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.googletest.url'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.benchmark.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.benchmark.url'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.superlu.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.superlu.url'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.json.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.json.url'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.pugixml.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.pugixml.url'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.TASMANIAN.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.TASMANIAN.url'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.sprng5.path'. Skipping second one!
warning: aa4890f05bd9b3cab225425ad38b08ebfce3a897:.gitmodules, multiple configurations found for 'submodule.sprng5.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.googletest.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.googletest.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.benchmark.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.benchmark.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.superlu.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.superlu.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.json.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.json.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.pugixml.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.pugixml.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.TASMANIAN.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.TASMANIAN.url'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.sprng5.path'. Skipping second one!
warning: e6b4fabd3e5c0db7e2dad498fcf76ccd11bae6ed:.gitmodules, multiple configurations found for 'submodule.sprng5.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.googletest.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.googletest.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.benchmark.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.benchmark.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.superlu.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.superlu.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.json.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.json.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.pugixml.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.pugixml.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.TASMANIAN.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.TASMANIAN.url'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.sprng5.path'. Skipping second one!
warning: ae033fbaa4f7658e9c98b7457924d11f6dc71c61:.gitmodules, multiple configurations found for 'submodule.sprng5.url'. Skipping second one!
From https://gitlab.kit.edu/kit/mpp/mpp
* [new branch] 727-qmc-generator -> origin/727-qmc-generator
* [new branch] 766-hdf5-support -> origin/766-hdf5-support
* [new branch] 766-hdf5-support-Hdf5Basic -> origin/766-hdf5-support-Hdf5Basic
* [new branch] 766-hdf5-support-Parallel -> origin/766-hdf5-support-Parallel
* [new branch] 766-hdf5-support-ParallelTest -> origin/766-hdf5-support-ParallelTest
* [new branch] 782-fix-multigrid-for-nonlinear-problems -> origin/782-fix-multigrid-for-nonlinear-problems
* [new branch] 784-include-estimators-in-sgd -> origin/784-include-estimators-in-sgd
* [new branch] 787-random-material-sampling -> origin/787-random-material-sampling
* [new branch] 791-create-non-linear-spacetime-acoustic-assemble -> origin/791-create-non-linear-spacetime-acoustic-assemble
* [new branch] 792-ginkgo-interface-2 -> origin/792-ginkgo-interface-2
* [new branch] NumL-Distribution-Adaptivity -> origin/NumL-Distribution-Adaptivity
* [new branch] Update-VtuConverter -> origin/Update-VtuConverter
* [new branch] benchmarks -> origin/benchmarks
* [new branch] better-elliptic-tests -> origin/better-elliptic-tests
* [new branch] feat/matrixFree -> origin/feat/matrixFree
* [new branch] feature-changedprecision -> origin/feature-changedprecision
* [new branch] master -> origin/master
* [new branch] merge-transport-solid -> origin/merge-transport-solid
* [new branch] mppytorch -> origin/mppytorch
* [new branch] ref/matrixFreeMemoryChanges -> origin/ref/matrixFreeMemoryChanges
* [new branch] transport-solid -> origin/transport-solid
Checkout 5706b036e059f7fd650aee592fc8f5d12a578514
Previous HEAD position was e448af94 Merge branch '794-full-field-experiments-and-nightly-pipeline' into 'feature'
HEAD is now at 5706b036 [benchmarks] fix benchmark compile flags check if first runs are faulty
CMAKE_ARGS: -DMPP_BUILD_TYPE=MppDebugFast -DBUILD_CARDIAC_TESTS=ON -DBUILD_TUTORIAL=OFF -DBUILD_TUTORIAL_TESTS=OFF
-- The C compiler identification is GNU 13.3.0
-- The CXX compiler identification is GNU 13.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Option: SPACE_DIM= 3
-- Option: USE_DATAMESH= ON
-- Option: MPP_BUILD_TYPE= MppDebugFast (using cached value)
-- Option: SUPPRESS_WARNINGS= OFF
-- Option: AFFINE_LINEAR_TRAFO= ON
-- Option: BUILD_TESTS= OFF
-- Option: BUILD_CARDIAC_TESTS= ON (using cached value)
-- Option: BUILD_IBTLIBRARY= OFF
-- Option: BUILD_TUTORIAL= OFF (using cached value)
-- Option: BUILD_TUTORIAL_TESTS= OFF (using cached value)
-- Option: CONVERT_VTU= OFF
-- PROJECT_BINARY_DIR= /builds/kit/mpp/cardmech/build
-- PROJECT_SOURCE_DIR= /builds/kit/mpp/cardmech
-- PROJECT_MPP_DIR= /builds/kit/mpp/cardmech/mpp
-- Option: BUILD_UQ= OFF
-- Option: MPP_BUILD_TYPE= MppDebugFast (using cached value)
-- Option: DEBUG_LEVEL= 1
-- Option: CPP_VERSION= 20
-- Option: CPP_COMPILER_TYPE= c++
-- Option: SUPPRESS_WARNINGS= OFF (using cached value)
-- Option: BUILD_TESTS= OFF (using cached value)
-- Option: BUILD_BENCHMARKS= OFF
-- Option: CONST_GEOMETRIC_TOLERANCE= 1e-10
-- Option: CONST_NEAR_ZERO= 1e-15
-- Option: CONST_VERY_LARGE= 1e30
-- Option: CONST_INFTY= 1e100
-- Option: SPACE_DIM= 3 (using cached value)
-- Option: USE_SPACETIME= OFF
-- Option: AFFINE_LINEAR_TRAFO= ON (using cached value)
-- Option: USE_SUPERLU= ON
-- Option: USE_CXSC= OFF
-- Sub option: BUILD_IA_TESTS= OFF (forced value)
-- Sub option: BUILD_CXSC_TOOLBOX= OFF (forced value)
-- Sub option: BUILD_CXSC_EXAMPLES= OFF (forced value)
-- Sub option: BUILD_IA_VERIFY_QUAD= OFF (forced value)
-- Option: USE_FFTW= OFF
-- Option: USE_DATAMESH= ON (using cached value)
-- Option: BUILD_TUTORIAL= OFF (using cached value)
-- Sub option: BUILD_TUTORIAL_TESTS= OFF (forced value)
-- Sub option: BUILD_UQ_TESTS= OFF (forced value)
-- Sub option: USE_TASMANIAN= OFF (forced value)
-- Sub option: AGGREGATE_FOR_SOLUTION= OFF (forced value; value was ON)
-- Option: CONVERT_VTU= OFF (using cached value)
-- Found Python3: /usr/bin/python3 (found version "3.12.3") found components: Interpreter
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Failed to find LLVM FileCheck
-- Found Git: /usr/bin/git (found version "2.43.0")
-- git version: v0.0.0 normalized to 0.0.0
-- Google Benchmark version: 1.8.3
-- Looking for shm_open in rt
-- Looking for shm_open in rt - found
-- Performing Test HAVE_CXX_FLAG_WALL
-- Performing Test HAVE_CXX_FLAG_WALL - Success
-- Performing Test HAVE_CXX_FLAG_WEXTRA
-- Performing Test HAVE_CXX_FLAG_WEXTRA - Success
-- Performing Test HAVE_CXX_FLAG_WSHADOW
-- Performing Test HAVE_CXX_FLAG_WSHADOW - Success
-- Performing Test HAVE_CXX_FLAG_WFLOAT_EQUAL
-- Performing Test HAVE_CXX_FLAG_WFLOAT_EQUAL - Success
-- Performing Test HAVE_CXX_FLAG_WOLD_STYLE_CAST
-- Performing Test HAVE_CXX_FLAG_WOLD_STYLE_CAST - Success
-- Performing Test HAVE_CXX_FLAG_WERROR
-- Performing Test HAVE_CXX_FLAG_WERROR - Success
-- Performing Test HAVE_CXX_FLAG_WSUGGEST_OVERRIDE
-- Performing Test HAVE_CXX_FLAG_WSUGGEST_OVERRIDE - Success
-- Performing Test HAVE_CXX_FLAG_PEDANTIC
-- Performing Test HAVE_CXX_FLAG_PEDANTIC - Success
-- Performing Test HAVE_CXX_FLAG_PEDANTIC_ERRORS
-- Performing Test HAVE_CXX_FLAG_PEDANTIC_ERRORS - Success
-- Performing Test HAVE_CXX_FLAG_WSHORTEN_64_TO_32
-- Performing Test HAVE_CXX_FLAG_WSHORTEN_64_TO_32 - Failed
-- Performing Test HAVE_CXX_FLAG_FSTRICT_ALIASING
-- Performing Test HAVE_CXX_FLAG_FSTRICT_ALIASING - Success
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED_DECLARATIONS
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED_DECLARATIONS - Success
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED
-- Performing Test HAVE_CXX_FLAG_WNO_DEPRECATED - Success
-- Performing Test HAVE_CXX_FLAG_WSTRICT_ALIASING
-- Performing Test HAVE_CXX_FLAG_WSTRICT_ALIASING - Success
-- Performing Test HAVE_CXX_FLAG_WD654
-- Performing Test HAVE_CXX_FLAG_WD654 - Failed
-- Performing Test HAVE_CXX_FLAG_WTHREAD_SAFETY
-- Performing Test HAVE_CXX_FLAG_WTHREAD_SAFETY - Failed
-- Performing Test HAVE_CXX_FLAG_COVERAGE
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-- Compiling and running to test HAVE_STD_REGEX
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-- Compiling and running to test HAVE_GNU_POSIX_REGEX
-- Performing Test HAVE_GNU_POSIX_REGEX -- failed to compile
-- Compiling and running to test HAVE_POSIX_REGEX
-- Performing Test HAVE_POSIX_REGEX -- success
-- Compiling and running to test HAVE_STEADY_CLOCK
-- Performing Test HAVE_STEADY_CLOCK -- success
-- Compiling and running to test HAVE_PTHREAD_AFFINITY
-- Performing Test HAVE_PTHREAD_AFFINITY -- success
-- Looking for sgemm_
-- Looking for sgemm_ - not found
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-- Looking for sgemm_ - found
-- Found BLAS: /usr/lib/x86_64-linux-gnu/libblas.so
-- Looking for cheev_
-- Looking for cheev_ - not found
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-- Looking for cheev_ - found
-- Found LAPACK: /usr/lib/x86_64-linux-gnu/liblapack.so;/usr/lib/x86_64-linux-gnu/libblas.so
CMake Deprecation Warning at mpp/submodules/superlu/CMakeLists.txt:8 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
Process XSDK defaults ...
USE_XSDK_DEFAULTS = 'FALSE'
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-- Found MPI_C: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi.so (found version "3.1")
-- Found MPI_CXX: /usr/lib/x86_64-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Checking for module 'libtirpc'
-- Found libtirpc, version 1.3.4
-- Found TIRPC: /usr/lib/x86_64-linux-gnu/libtirpc.so (found version "1.3.4")
-- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3")
-- Setting prepare commit message hook to mpp
file: /builds/kit/mpp/cardmech/mpp/doc/../../.git/modules/mpp/hooks/prepare-commit-msg
-- Configuring done (11.5s)
-- Generating done (0.5s)
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../../../src/cellmodels/solvers/MTensionSolver.cpp: In member function ‘virtual void MTensionSolver::Solve(TimeSeries&, Vectors&)’:
../../../src/cellmodels/solvers/MTensionSolver.cpp:18:28: warning: ‘uint16_t row::n() const’ is deprecated: Use NumberOfDofs instead [-Wdeprecated-declarations]
18 | for (int j = 0; j < r.n(); ++j) {
| ~~~^~
In file included from ../../../mpp/src/lib3_disc/matrixgraph/IMatrixGraph.hpp:12,
from ../../../mpp/src/lib3_disc/matrixgraph/MatrixGraph.hpp:4,
from ../../../mpp/src/lib4_fem/discretization/IDiscretization.hpp:6,
from ../../../mpp/src/lib4_fem/algebra/VectorMatrixBase.hpp:12,
from ../../../mpp/src/lib4_fem/algebra/Vector.hpp:21,
from ../../../mpp/src/lib4_fem/plot/VtuPlot.hpp:32,
from ../../../mpp/src/lib4_fem/plot/Plotting.hpp:7,
from ../../../src/cellmodels/solvers/MTensionSolver.cpp:1:
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:75:12: note: declared here
75 | uint16_t n() const {
| ^
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[ 85%] Building CXX object src/electrophysiology/problem/CMakeFiles/ELPHY_PROBLEMS.dir/ElphyBenchmarkProblem.cpp.o
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[ 87%] Building CXX object src/elasticity/CMakeFiles/ELASTICITY.dir/MultiElasticity.cpp.o
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[ 94%] Built target TestPressureElasticity
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[ 94%] Building CXX object src/electrophysiology/CMakeFiles/ELECTROPHYSIOLOGY.dir/MainMonodomain.cpp.o
[ 95%] Building CXX object src/electrophysiology/CMakeFiles/ELECTROPHYSIOLOGY.dir/MainOneCell.cpp.o
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[ 96%] Building CXX object src/coupled/solvers/CMakeFiles/COUPLED_SOLVERS.dir/CellModelSolver.cpp.o
[ 96%] Linking CXX static library libCOUPLED_SOLVERS.a
[ 96%] Linking CXX static library libELECTROPHYSIOLOGY.a
[ 96%] Built target COUPLED_SOLVERS
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[ 97%] Linking CXX shared library libCOUPLED.so
[ 97%] Linking CXX executable TestMonodomain
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[ 97%] Building CXX object CMakeFiles/M++.dir/src/MainCardMech.cpp.o
[ 97%] Building CXX object test/coupled/CMakeFiles/TestCoupledConsistencyMPI.dir/TestCoupledConsistency.cpp.o
[ 97%] Building CXX object CMakeFiles/Elphy-M++.dir/src/MainCardMech.cpp.o
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[ 97%] Building CXX object test/coupled/CMakeFiles/TestDeformedDiffusionMPI.dir/TestDeformedDiffusion.cpp.o
[ 98%] Linking CXX executable TestDeformedDiffusionMPI
../src/MainCardMech.cpp: In function ‘int main(int, char**)’:
../src/MainCardMech.cpp:17:27: warning: ‘bool ParallelProgrammingModel::master() const’ is deprecated: Use Master instead! [-Wdeprecated-declarations]
17 | if (clear && PPM->master()) {
In file included from ../mpp/src/lib2_mesh/mesh/CoarseGeometry.hpp:10,
from ../mpp/src/lib2_mesh/mesh/Mesh.hpp:16,
from ../mpp/src/lib4_fem/plot/VtuPlot.hpp:27,
from ../src/MainCardMech.hpp:6,
from ../src/electrophysiology/MainMonodomain.hpp:4,
from ../src/MainCardMech.cpp:3:
../mpp/src/lib0_basic/parallel/Parallel.hpp:244:8: note: declared here
244 | bool master() const {
| ^~~~~~
../src/MainCardMech.cpp: In function ‘int main(int, char**)’:
../src/MainCardMech.cpp:17:27: warning: ‘bool ParallelProgrammingModel::master() const’ is deprecated: Use Master instead! [-Wdeprecated-declarations]
17 | if (clear && PPM->master()) {
In file included from ../mpp/src/lib2_mesh/mesh/CoarseGeometry.hpp:10,
from ../mpp/src/lib2_mesh/mesh/Mesh.hpp:16,
from ../mpp/src/lib4_fem/plot/VtuPlot.hpp:27,
from ../src/MainCardMech.hpp:6,
from ../src/electrophysiology/MainMonodomain.hpp:4,
from ../src/MainCardMech.cpp:3:
../mpp/src/lib0_basic/parallel/Parallel.hpp:244:8: note: declared here
244 | bool master() const {
| ^~~~~~
[ 98%] Linking CXX executable Elphy-M++
[ 99%] Linking CXX executable M++
In file included from ../../../test/coupled/TestCoupledConsistency.cpp:2:
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp: In function ‘void EXPECT_MPPVECTOR_EQ(const Vector&, const Vector&)’:
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp:14:31: warning: ‘size_t row::size() const’ is deprecated: Use NumberOfEntries instead [-Wdeprecated-declarations]
14 | for (int i = 0; i < r.size(); ++i) {
| ~~~~~~^~
In file included from ../../../mpp/src/lib3_disc/matrixgraph/IMatrixGraph.hpp:12,
from ../../../mpp/src/lib3_disc/matrixgraph/MatrixGraph.hpp:4,
from ../../../mpp/src/lib4_fem/discretization/IDiscretization.hpp:6,
from ../../../mpp/src/lib4_fem/algebra/VectorMatrixBase.hpp:12,
from ../../../mpp/src/lib4_fem/algebra/Vector.hpp:21,
from ../../../test/TestEnvironmentCardMech.hpp:5,
from ../../../test/coupled/TestCoupledConsistency.cpp:1:
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:80:10: note: declared here
80 | size_t size() const {
| ^~~~
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp: In function ‘void ASSERT_MPPVECTOR_EQ(const Vector&, const Vector&)’:
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp:27:28: warning: ‘uint16_t row::n() const’ is deprecated: Use NumberOfDofs instead [-Wdeprecated-declarations]
27 | for (int i = 0; i < r.n(); ++i) {
| ~~~^~
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:75:12: note: declared here
75 | uint16_t n() const {
| ^
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp: In function ‘void EXPECT_MPPVECTOR_NEAR(const Vector&, const Vector&, double)’:
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp:40:31: warning: ‘size_t row::size() const’ is deprecated: Use NumberOfEntries instead [-Wdeprecated-declarations]
40 | for (int i = 0; i < r.size(); ++i) {
| ~~~~~~^~
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:80:10: note: declared here
80 | size_t size() const {
| ^~~~
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp: In function ‘void ASSERT_MPPVECTOR_NEAR(const Vector&, const Vector&, double)’:
../../../mpp/tests/test4_fem/TestEnvironmentLib4.hpp:53:28: warning: ‘uint16_t row::n() const’ is deprecated: Use NumberOfDofs instead [-Wdeprecated-declarations]
53 | for (int i = 0; i < r.n(); ++i) {
| ~~~^~
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:75:12: note: declared here
75 | uint16_t n() const {
| ^
[ 99%] Linking CXX executable TestCoupledConsistencyMPI
../../../test/coupled/TestCardiacTransfers.cpp: In function ‘void FillCardiacVector(Vector&)’:
../../../test/coupled/TestCardiacTransfers.cpp:60:28: warning: ‘uint16_t row::n() const’ is deprecated: Use NumberOfDofs instead [-Wdeprecated-declarations]
60 | for (int i = 0; i < r.n(); ++i) {
| ~~~^~
In file included from ../../../mpp/src/lib3_disc/matrixgraph/IMatrixGraph.hpp:12,
from ../../../mpp/src/lib3_disc/matrixgraph/MatrixGraph.hpp:4,
from ../../../mpp/src/lib4_fem/discretization/IDiscretization.hpp:6,
from ../../../mpp/src/lib4_fem/algebra/VectorMatrixBase.hpp:12,
from ../../../mpp/src/lib4_fem/algebra/Vector.hpp:21,
from ../../../test/TestEnvironmentCardMech.hpp:5,
from ../../../test/coupled/TestCardiacTransfers.cpp:2:
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:75:12: note: declared here
75 | uint16_t n() const {
| ^
../../../test/coupled/TestCardiacTransfers.cpp: In function ‘void ASSERT_MULTIPART_CONSTANT(const Vector&, const std::vector<int>&, double, double)’:
../../../test/coupled/TestCardiacTransfers.cpp:74:30: warning: ‘uint16_t row::n() const’ is deprecated: Use NumberOfDofs instead [-Wdeprecated-declarations]
74 | for (int i = 0; i < r.n(); ++i) {
| ~~~^~
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:75:12: note: declared here
75 | uint16_t n() const {
| ^
../../../test/coupled/TestCardiacTransfers.cpp: In function ‘void ASSERT_MULTIPART_LINEAR(const Vector&, const std::vector<int>&, double)’:
../../../test/coupled/TestCardiacTransfers.cpp:89:30: warning: ‘uint16_t row::n() const’ is deprecated: Use NumberOfDofs instead [-Wdeprecated-declarations]
89 | for (int i = 0; i < r.n(); ++i) {
| ~~~^~
../../../mpp/src/lib3_disc/matrixgraph/RowIterators.hpp:75:12: note: declared here
75 | uint16_t n() const {
| ^
[100%] Linking CXX executable TestCardiacTransfersMPI
[100%] Built target TestDeformedDiffusionMPI
[100%] Built target TestCoupledConsistencyMPI
[100%] Built target TestCardiacTransfersMPI
[100%] Built target M++
[100%] Built target Elphy-M++
section_end:1743254779:step_script
[0Ksection_start:1743254779:after_script
[0K[0K[36;1mRunning after_script[0;m[0;m
[32;1mRunning after script...[0;m
[32;1m$ ccache -s[0;m
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Local storage:
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section_end:1743254780:after_script
[0Ksection_start:1743254780:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build-cardmech-ubuntu24.04:feature-3-protected...[0;m
build/: found 2391 matching artifact files and directories[0;m
Uploading cache.zip to http://rook-ceph-rgw-runner-cache.rook-ceph.svc/runner-cache-b8e508f4-8327-4ffe-9d9b-c3a2e75c9ab1/gitlab-runner-mpp/runner/83j_cbA7v/project/159678/build-cardmech-ubuntu24.04%3Afeature-3-protected[0;m
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.ccache/: found 2620 matching artifact files and directories[0;m
Uploading cache.zip to http://rook-ceph-rgw-runner-cache.rook-ceph.svc/runner-cache-b8e508f4-8327-4ffe-9d9b-c3a2e75c9ab1/gitlab-runner-mpp/runner/83j_cbA7v/project/159678/ccache-build-cardmech-ubuntu24.04%3Afeature-3-non_protected[0;m
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[32;1mCreated cache[0;m
section_end:1743255009:archive_cache
[0Ksection_start:1743255009:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
build.env: found 1 matching artifact files and directories[0;m
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Uploading artifacts as "dotenv" to coordinator... 201 Created[0;m id[0;m=1578314 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1743255011:upload_artifacts_on_success
[0Ksection_start:1743255011:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1743255011:cleanup_file_variables
[0K[32;1mJob succeeded[0;m